Scientific Document
From Networkbiology.net
Related to Network Biology
-Review
Barabasi AL & Oltvai ZN. Network Biology: Understanding the Cell's Functional Organization. Nature Review in Genetics, 5,101-113(Feb, 2004)
Oltval ZN & Barabasi AL. Life's Complexity Pyramid Science, 298,763-764(Oct, 2002)
Valentie JW. Architectures of Biological Complexity. Integr. Comp. Biol, 43:99-103(2003)
Soinov L. Supervised Classification for gene network reconstruction. Biochemical Society 1497-1502(2003)
Arita M. Scale-Freesness and Biological Networks J. Biochem 138,1-4(2005)
Barabasi AL and Bonabeau E. Scale-Free Netowks. Scientific America 50-59(2003)
-Tool & Web Application
Yu H et al. TopNet: a tool for comparing biological subnetworks, correlating protein properties with topological statistics. NAR 32,328-337(2004)
Related to OMICS
-Review
Palsson BO and Joyce AR. The Model Organism as a System:Integrating 'Omics' Data Sets. Nature Review in molecular Cell Biology, 7,198-210(March, 2006)
Related to Alternative Splicing
-Review
Blencowe BJ. Alternative Splicing: New Insights from Global Analyses. Cell 126,37-47(July, 2006)
Related to Co-experessional Network Analysis
-Graphical Gaussian Modeling
Toh H and Horimoto K. Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling. Bioinformatics 18,287-297(2002)
Wu X, Ye Y, Subramanian KR. Interavtive Analysis of Gene Interactions Using Graphical Gaussian Model. Workship on Data Mining in Bioinformatics 63-69(2003)
Wang J, Myklebost O, and Hovig E. MGraph: graphical models for microarray data anlaysis. Bioinformatics 19,2210-2211(2003).
Will A et al. Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana. Genome Biology 5:R92(2004)
Schafer J and Strimmer K. Larning Large-Scale Graphical Gaussian Models from Genomics Data.
Matsuno T et al. Graphical Gaussian Modeling for Gene Association Structures Based on Expression Deviation Patterns Induced By Various Chemical Stimuli, IEICE TRANS. INF & SYST. E89,1563-1571(2006)
Aburatani S. et al. Gene Systems Network Inferred from Expression Profiles in Hepatocellular Carcinogenesis by Graphical Gaussian Model. EURASIP Jouranl on Bioinformatics and System Biology (2007)
- Comparsion
Werhli AV, Grzegorczk M, Husmeier D. Comparative evalution of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian network. Bioinformatics, 22, 2523-2531(2006)
